cola-rh.github.io

Examples of hierarchical consensus partitioning analysis

The analysis is done with the cola package (version >= 2.0.0).

Dataset #Columns Data type HTML Report
HSMM_single_cell 271 scRNASeq https://cola-rh.github.io/HSMM_single_cell/
PBMC 2638 scRNASeq https://cola-rh.github.io/PBMC/
GSE90496 2801 450K methylation array https://cola-rh.github.io/GSE90496/
Golub_leukemia 72 Microarray, gene expression https://cola-rh.github.io/Golub_leukemia/
Ritz_ALL 128 Microarray, gene expression https://cola-rh.github.io/Ritz_ALL/
TCGA_GBM_microarray 173 Microarray, gene expression https://cola-rh.github.io/TCGA_GBM_microarray/
BaronPancreas_mouse 1886 scRNASeq https://cola-rh.github.io/BaronPancreas_mouse/
BuettnerESC 288 scRNASeq https://cola-rh.github.io/BuettnerESC/
DarmanisBrain 466 scRNASeq https://cola-rh.github.io/DarmanisBrain/
GrunHSC 1915 scRNASeq https://cola-rh.github.io/GrunHSC/
GrunPancreas 1728 scRNASeq https://cola-rh.github.io/GrunPancreas/
KolodziejczykESC 704 scRNASeq https://cola-rh.github.io/KolodziejczykESC/
LaMannoBrain_human_es 1715 scRNASeq https://cola-rh.github.io/LaMannoBrain_human_es/
LaMannoBrain_human_embryo 1977 scRNASeq https://cola-rh.github.io/LaMannoBrain_human_embryo/
LaMannoBrain_human_ips 337 scRNASeq https://cola-rh.github.io/LaMannoBrain_human_ips/
LaMannoBrain_adult 243 scRNASeq https://cola-rh.github.io/LaMannoBrain_adult/
LaMannoBrain_mouse_embryo 1907 scRNASeq https://cola-rh.github.io/LaMannoBrain_mouse_embryo/
LawlorPancreas 638 scRNASeq https://cola-rh.github.io/LawlorPancreas/
LengESC 460 scRNASeq https://cola-rh.github.io/LengESC/
ReprocessedTh2 96 scRNASeq https://cola-rh.github.io/ReprocessedTh2/
MessmerESC 1344 scRNASeq https://cola-rh.github.io/MessmerESC/
MuraroPancreas 3072 scRNASeq https://cola-rh.github.io/MuraroPancreas/
NestorowaHSC 1920 scRNASeq https://cola-rh.github.io/NestorowaHSC/
PollenGlia 367 scRNASeq https://cola-rh.github.io/PollenGlia/
RichardTCell 572 scRNASeq https://cola-rh.github.io/RichardTCell/
RomanovBrai 2881 scRNASeq https://cola-rh.github.io/RomanovBrai/
SegerstolpePancreas 3514 scRNASeq https://cola-rh.github.io/SegerstolpePancreas/
TasicBrain 1809 scRNASeq https://cola-rh.github.io/TasicBrain/
ReprocessedAllen 379 scRNASeq https://cola-rh.github.io/ReprocessedAllen/
XinPancreas 1600 scRNASeq https://cola-rh.github.io/XinPancreas/
ZeiselBrain 3005 scRNASeq https://cola-rh.github.io/ZeiselBrain/
Fluidigm 65 scRNASeq https://cola-rh.github.io/Fluidigm/
TCGA_ACC_methylation 80 450K methylation array https://cola-rh.github.io/TCGA_ACC_methylation/
TCGA_BLCA_methylation 434 450K methylation array https://cola-rh.github.io/TCGA_BLCA_methylation/
TCGA_BRCA_methylation 888 450K methylation array https://cola-rh.github.io/TCGA_BRCA_methylation/
TCGA_CESC_methylation 312 450K methylation array https://cola-rh.github.io/TCGA_CESC_methylation/
TCGA_COAD_methylation 337 450K methylation array https://cola-rh.github.io/TCGA_COAD_methylation/
TCGA_COADREAD_methylation 443 450K methylation array https://cola-rh.github.io/TCGA_COADREAD_methylation/
TCGA_ESCA_methylation 202 450K methylation array https://cola-rh.github.io/TCGA_ESCA_methylation/
TCGA_GBM_methylation 155 450K methylation array https://cola-rh.github.io/TCGA_GBM_methylation/
TCGA_GBMLGG_methylation 685 450K methylation array https://cola-rh.github.io/TCGA_GBMLGG_methylation/
TCGA_HNSC_methylation 580 450K methylation array https://cola-rh.github.io/TCGA_HNSC_methylation/
TCGA_KICH_methylation 66 450K methylation array https://cola-rh.github.io/TCGA_KICH_methylation/
TCGA_KIRC_methylation 480 450K methylation array https://cola-rh.github.io/TCGA_KIRC_methylation/
TCGA_KIRP_methylation 321 450K methylation array https://cola-rh.github.io/TCGA_KIRP_methylation/
TCGA_LAML_methylation 194 450K methylation array https://cola-rh.github.io/TCGA_LAML_methylation/
TCGA_LGG_methylation 530 450K methylation array https://cola-rh.github.io/TCGA_LGG_methylation/
TCGA_LIHC_methylation 429 450K methylation array https://cola-rh.github.io/TCGA_LIHC_methylation/
TCGA_LUAD_methylation 492 450K methylation array https://cola-rh.github.io/TCGA_LUAD_methylation/
TCGA_LUNG_methylation 907 450K methylation array https://cola-rh.github.io/TCGA_LUNG_methylation/
TCGA_LUSC_methylation 415 450K methylation array https://cola-rh.github.io/TCGA_LUSC_methylation/
TCGA_MESO_methylation 87 450K methylation array https://cola-rh.github.io/TCGA_MESO_methylation/
TCGA_PAAD_methylation 195 450K methylation array https://cola-rh.github.io/TCGA_PAAD_methylation/
TCGA_PCPG_methylation 187 450K methylation array https://cola-rh.github.io/TCGA_PCPG_methylation/
TCGA_PRAD_methylation 549 450K methylation array https://cola-rh.github.io/TCGA_PRAD_methylation/
TCGA_READ_methylation 106 450K methylation array https://cola-rh.github.io/TCGA_READ_methylation/
TCGA_SARC_methylation 269 450K methylation array https://cola-rh.github.io/TCGA_SARC_methylation/
TCGA_SKCM_methylation 476 450K methylation array https://cola-rh.github.io/TCGA_SKCM_methylation/
TCGA_STAD_methylation 398 450K methylation array https://cola-rh.github.io/TCGA_STAD_methylation/
TCGA_TGCT_methylation 156 450K methylation array https://cola-rh.github.io/TCGA_TGCT_methylation/
TCGA_THCA_methylation 571 450K methylation array https://cola-rh.github.io/TCGA_THCA_methylation/
TCGA_THYM_methylation 126 450K methylation array https://cola-rh.github.io/TCGA_THYM_methylation/
TCGA_UCEC_methylation 478 450K methylation array https://cola-rh.github.io/TCGA_UCEC_methylation/
TCGA_UCS_methylation 57 450K methylation array https://cola-rh.github.io/TCGA_UCS_methylation/
TCGA_UVM_methylation 80 450K methylation array https://cola-rh.github.io/TCGA_UVM_methylation/